Doing Business in Japan
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Knowledge base on doing business in Japan. Topics: visas and immigration (including the Business Manager visa 経営・管理 and the October 2025 reform), company registration (株式会社/合同会社/個人事業主), taxes, legal issues and cases, documents and procedures (banking, offices, accounting, hiring), useful links and contacts, and other business-relevant topics (culture and mentality, networking, marketing, real estate, lending, insurance).
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VAT refund mechanics: how it works, accounting treatment, exporters, and audit risk
VAT refunds work by reclaiming tax paid on purchases when selling abroad; a refund counts as other income (not profit) but still raises the taxable base; it mainly benefits exporters, comes with a…
Japan's VAT refund mechanism works the standard way found in most countries: a business first pays VAT on purchases, then reclaims the tax paid when it exports — this principle underlies the business model of exporters, such as car exporters. A refund is not counted as company profit (純利益) for reporting purposes — it is "other income" (雑収入); the refund itself is not taxed again as VAT, but it does increase the taxable base for corporate income tax. This was confirmed by a practicing entrepreneur with 9 years of experience claiming quarterly VAT refunds. Example: buying goods for 110 million yen (100 million goods + 10 million tax) and selling abroad for 120 million yen means the amount subject to profit tax is 10 million yen, not 20 million; refunded money can be spent on anything and is not taxed again. Exported goods are not subject to the 10% consumption tax (免税取引), but the fact of export must be documented — a basic condition for the exemption to apply. To claim a refund with no profit or at the start of operations, a business must file in advance the "消費税課税事業者選択届出書" (election to be a taxable business) in the year the refund is planned — a separate mechanism from the qualified invoice system, letting a business switch to taxable status without mandatory invoice-system registration; a guide with a calculator exists for evaluating whether this is worthwhile. A refund is mainly beneficial to businesses whose sales are clearly export (untaxed) while expenses are domestic (taxed); otherwise the benefit may not offset the higher accounting cost that comes with taxable status. A "2-year lock-in" rule applies: choosing the refund scheme in the first year (expenses exceeding revenue) means the business cannot revert to the exemption for the next 2 years; rising revenue then triggers a switch to mandatory consumption-tax payment. Finally, frequent VAT refund requests draw increased tax office attention to a company, which is worth factoring into how often a business without a clear export focus files for refunds. Source: https://www.nta.go.jp/taxes/shiraberu/taxanswer/shohi/6901.htm — Official NTA page on the consumption tax refund for exports.. Source: https://www.morifuku.jp/14149103060730 — Breakdown of accounting for a VAT refund as other income, on an accounting site.. Source: https://inoshi.cc/ru/guides/consumption-tax-refund — Guide with a calculator for evaluating the benefit of claiming a consumption tax refund for new companies..